Package index • GDRarity

All functions

assign_rarity_types(): Assign rarity types based on rarity restriction

avg_evol_dist(): Calculate average evolutionary distinctiveness (ED) for a set of species

build_trait_data_BIEN(): Retrieve and Clean BIEN Trait Data for a Species

build_trait_data_LEDA(): Build Trait Data from the LEDA Traitbase

calc_range_size(): Calculate range sizes for multiple species

calculate_phylo_mpd(): Calculate Phylogenetic Mean Pairwise Distance (MPD) per Species per Site

check_biomes(): Analyze Species Convex Hulls Against Biome Data

check_continents(): Check Range Intersections with Continent Polygons

clean_trait_data_BIEN(): Clean BIEN Trait Data

clip_polygons_to_land(): Clip species range polygons to land boundaries

collapse_BIEN_traits(): Collapse BIEN Trait Data by Species

compute_mean_si(): Compute Mean Scarcity Index (Si) for Each Species

compute_wcss(): Compute Within-Cluster Sum of Squares (WCSS)

eval_restriction_performance(): Evaluate Restriction Performance Using ANOVA

find_optimal_k(): Find the Optimal Number of Clusters (k) Using the Elbow Method

fun_dist(): Calculate Relative Functional Distinctiveness (FD) from Trait Data

gdrare_pipeline(): Global Discretized Rarity Pipeline

get_best_methods(): Get Best Methods of Applying Each Restriction Per Response Variable Based on AIC

get_continent_sf(): Get continent spatial data from a GeoJSON file

get_phy_angio(): Get Phylogeny of Angiosperms

get_range_convex_hulls(): Get Convex Hull Polygons for Species from GBIF Data

map_est_types(): Map Rarity Types to Established Restrictions.

prepare_gdrarity_axes(): Compute Rarity Dimensions Based on Selected Restrictions

prepare_gdrarity_models(): Prepare Restrictions for the Global Model of Discretized Rarity

range_sizes(): Compute range sizes (sq km) from clipped or raw range polygons

rename_model_code(): Rename Restriction Codes to Simplified Names

rename_model_columns(): Rename Columns in a Data Frame Based on Restriction Names

restriction_performance_pipeline(): Run Full Restriction Performance Pipeline

run_all_gdrare_combos(): Run All Restrictions of the Global Model of Discretized Rarity

scale_by_median(): Scale by Median